Package: biometrics 1.0.4

biometrics: A Package for Biometrics and Modelling

A system of functions and datasets to carry out quantitative analyses in the biological sciences. The package facilitates data management, exploratory analyses, and model assessment. Although it currently focuses on forest ecology, silviculture and decision-making, most of the package functions are applicable across several disciplines, including economics, environmental science, and healthcare.

Authors:Christian Salas-Eljatib [aut, cre], Nicolas Campos [ctb], Marcos Marivil [ctb]

biometrics_1.0.4.tar.gz
biometrics_1.0.4.zip(r-4.7)biometrics_1.0.4.zip(r-4.6)biometrics_1.0.4.zip(r-4.5)
biometrics_1.0.4.tgz(r-4.6-any)biometrics_1.0.4.tgz(r-4.5-any)
biometrics_1.0.4.tar.gz(r-4.7-any)biometrics_1.0.4.tar.gz(r-4.6-any)
biometrics_1.0.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
biometrics/json (API)

# Install 'biometrics' in R:
install.packages('biometrics', repos = c('https://cseljatib.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • biomass - Contains tree-level biomass data for four species in Canada.
  • biomass2 - Biomasa a nivel de árbol para cuatro especies arbóreas de Canadá
  • cwd - Contains coarse woody debris measurement in a unit of line intersect sampling.
  • cwd2 - Contiene mediciones de material leñoso muerto en una unidad de muestreo de linea.
  • deadlianas - Mortality of lianas (vines) in tropical forests
  • deadlianas2 - Datos de mortalidad de lianas en árboles tropicales
  • eucaplot - Tree-level data from a sample plot established in a _Eucalyptus globulus_ plantation
  • eucaplot2 - Lista de árboles con todas las variables medidas en una parcela de muestreo, establecida en una plantación de _Eucalyptus globulus_.
  • eucaplotr - Tree-list (realistic-) data in a sample plot established in a _Eucalyptus globulus_ plantation in southern Chile.
  • eucaplotr2 - Lista de árboles con variables medidas (más realista) en una parcela de muestreo, establecida en una plantación de Eucalyptus globulus.
  • hawaii - Diameter growth increments of a tropical tree species in Hawaii
  • hawaii2 - Incremento corriente anual en diámetro de una especie tropical en Hawaii
  • largeplot - Tree spatial coordinates in a large sample plot in Fennoscandia
  • mortaforest - Climatic, forest structure and forest mortality variables in California
  • mortaforest2 - Mortalidad en bosques, y variables climáticas y de estructura forestal en California
  • pinaster - Tree volume for Pinus pinaster in the Baixo-Mino, Galicia, Spain
  • pinaster2 - Volumen individual de árboles de Pinus pinaster en Galicia, España
  • pinusSpp - Tree-level variables of several sample plots of invasive Pinus spp in Chile
  • pinusSpp2 - Variables a nivel de árbol en parcelas de muestreo de Pinus spp en Chile.
  • plantshawaii - Maximum plant size in the Hawaiian archipelago
  • popvol - Population of stand-volume for 400 elements.
  • popvol2 - Población de 400 elementos de la variable volumen de bosque
  • radiatapl - Sampling plots data from a Pinus radiata plantation near Capitán Pastene, La Araucanía region, Chile.
  • radiatapl2 - Datos a nivel de árbol de parcelas de muestreo en plantaciones de Pinus radiata
  • spataustria - Tree locations within sample plots in an experimental forest in Austria
  • spatimepsp - Temporal tree locations within a sample plot in the Vienna woods
  • spplist - List of botanical attributes of plant species
  • standtabCoihue - Stand table for a _Nothofagus dombeyi_ (coihue) forest
  • standtabCoihue2 - Tabla de rodal para bosque de _Nothofagus dombeyi_
  • standtabRauli - Stand tables for _Nothofagus alpina_ (raulí) forests
  • standtabRauli2 - Tablas de rodal para bosques de _Nothofagus alpina_
  • standtabRoble - Stand table for _Nothofagus obliqua_ (roble) secondary forests
  • standtabRoble2 - Tabla de rodal media para renovales de _Nothofagus obliqua_
  • tapereuca2 - Datos de ahusamiento de Eucalyptus regnans
  • thinningtrial - Stand variables by thinning treatment for secondary forests of _Drymis winteri_ near Valdivia, Chile.
  • thinningtrial2 - Variables de estado segun tratamiento de raleo en renovales de _Drymis winteri_ en Valdivia, Chile.
  • treegrowth - Diameter and height growth of Grand-fir sample trees.
  • treegrowth2 - Crecimiento en diámetro y altura de árboles muestra de Grand-fir.
  • treelistinve - Tree-list data from a forest sampling work
  • treelistinve2 - Lista de árboles en un muestreo forestal
  • treevolruca - Tree-level volume by species in the Rucamanque forest
  • treevolruca2 - Volumen a nivel de árbol para especies nativas del bosque de Rucamanque
  • trlhawaii - Tree-level information of forest plots across the Hawaiian archipelago.
  • trlpsptime - Long term tree-list data from permanent sample plots
  • trlremeasu - Tree-level remeasurements for a sample plot in a _Pinus radiata_ plantation
  • trlsmoopsp - Smoothed tree list data from permanent sample plots

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.82 score 22 scripts 566 downloads 50 exports 3 dependencies

Last updated from:ba190f23b2. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK145
source / vignettesOK181
linux-release-x86_64OK123
macos-release-arm64OK78
macos-oldrel-arm64OK90
windows-develOK115
windows-releaseOK122
windows-oldrelOK79
wasm-releaseOK109

Exports:assignsppasymreg.fxbankfitbankpredbarplotgrbertarich.fxbiging.fxcubicacurtis.fxcurtisori.fxdg.fxdomvarexpogral.fxexpogralfull.fxgompertz.fxgompertzm.fxgtreehossfeld.fxinterpy1interpy2inv.fxkozak.fxkozaklast.fxkozakln.fxlang.fxlogist.fxlogistm.fxmeyer.fxmmenten.fxmmweibullnaslund.fxnele.listogawa.fxpower.fxprodan.fxratkow.fxschnute.fxschuma.fxsibbesen.fxstage.fxstandtabstandvarstrand.fxstrandg.fxtaperpoly.fxtreestatuestimatorvolumeweib.fxwykoff.fx

Dependencies:gtoolslatticenlme

Readme and manuals

Help Manual

Help pageTopics
Assign species botanical information to a data frameassignspp
Function to compute the result of the asymptotic regression model, as an allometric functional form.asymreg.fx
Function that fits a list of models on a given dataframe.bankfit
Predicts the variable of interest for each model of the listbankpred
Function for building a barplot for one or two factorsbarplotgr
A function having the mathematical expression of the Bertalanffy-Richards model.bertarich.fx
Taper equation by Bigingbiging.fx
Contains tree-level biomass data for four species in Canada.biomass
Biomasa a nivel de árbol para cuatro especies arbóreas de Canadábiomass2
Compute taper volumecubica
Function to computes the result of the Curtis's allometric model.curtis.fx
Function to computes the result of the original Curtis's allometric model.curtisori.fx
Contains coarse woody debris measurement in a unit of line intersect sampling.cwd
Contiene mediciones de material leñoso muerto en una unidad de muestreo de linea.cwd2
Mortality of lianas (vines) in tropical forestsdeadlianas
Datos de mortalidad de lianas en árboles tropicalesdeadlianas2
Function to computes the diameter of the tree of average basal area.dg.fx
Function to compute a dominant stand-level variable based on a sample plot data.domvar
Tree-level data from a sample plot established in a _Eucalyptus globulus_ plantationeucaplot
Lista de árboles con todas las variables medidas en una parcela de muestreo, establecida en una plantación de _Eucalyptus globulus_.eucaplot2
Tree-list (realistic-) data in a sample plot established in a _Eucalyptus globulus_ plantation in southern Chile.eucaplotr
Lista de árboles con variables medidas (más realista) en una parcela de muestreo, establecida en una plantación de Eucalyptus globulus.eucaplotr2
Function that computes the result of the Stage allometric model.expogral.fx
Function that computes the result of the Stage allometric model.expogralfull.fx
Function to compute the result of the Gompertz allometric model.gompertz.fx
Function that computes the result of the modified Gompertz's model.gompertzm.fx
Function to compute basal area of a treegtree
Diameter growth increments of a tropical tree species in Hawaiihawaii
Incremento corriente anual en diámetro de una especie tropical en Hawaiihawaii2
Function that computes the result of the Hossfeld allometric model.hossfeld.fx
A simple linear interpolation function applicable to two vectors (X and Y), when the first element of Y is missing.interpy1
A simple linear interpolation function applicable to two vectors (X and Y), when the second element of Y is missing.interpy2
Function to compute the result of the simple linear inverse model.inv.fx
Function to computes the stem diameter of a tree according to the Kozak (1988) taper equation.kozak.fx
Function to computes the stem diameter of a tree according to the Kozak (2004) taper equation.kozaklast.fx
Function to computes the stem diameter of a tree according to the log-transformed Kozak (1988) taper equation.kozakln.fx
Function to computes the result of the Curtis's allometric model.lang.fx
Tree spatial coordinates in a large sample plot in Fennoscandialargeplot
A function having the mathematical expression of the Logistic model.logist.fx
A function having the mathematical expression of the Logistic modified model.logistm.fx
A function having the mathematical expression of the Meyer model.meyer.fx
A function having the mathematical expression of the Michaelis-Menten model.mmenten.fx
Function to estimates the parameters of the Weibull probability density function using the method of momentsmmweibull
Climatic, forest structure and forest mortality variables in California (USA)mortaforest
Mortalidad en bosques, y variables climáticas y de estructura forestal en California (USA)mortaforest2
A function having the mathematical expression of the Naslund model.naslund.fx
Extract the n-th element from a listnele.list
Function that computes the result of the Ogawa allometric model.ogawa.fx
Tree volume for Pinus pinaster in the Baixo-Mino, Galicia, Spainpinaster
Volumen individual de árboles de Pinus pinaster en Galicia, Españapinaster2
Tree-level variables of several sample plots of invasive Pinus spp in ChilepinusSpp
Variables a nivel de árbol en parcelas de muestreo de Pinus spp en Chile.pinusSpp2
Maximum plant size in the Hawaiian archipelagoplantshawaii
Population of stand-volume for 400 elements.popvol
Población de 400 elementos de la variable volumen de bosquepopvol2
Function to computes the result of the power model, as a classical allometric functional form.power.fx
A function having the mathematical expression of the Naslund model.prodan.fx
Sampling plots data from a Pinus radiata plantation near Capitán Pastene, La Araucanía region, Chile.radiatapl
Datos a nivel de árbol de parcelas de muestreo en plantaciones de Pinus radiataradiatapl2
Function that computes the result of the Ratkowsky allometric model.ratkow.fx
Function that computes the result of the Schnute allometric model.schnute.fx
A function having the mathematical expression of the Johnson-Schumacher model.schuma.fx
A function having the mathematical expression of the Sibbesen model.sibbesen.fx
Tree locations within sample plots in an experimental forest in Austriaspataustria
Temporal tree locations within a sample plot in the Vienna woodsspatimepsp
List of botanical attributes of plant speciesspplist
Function that computes the result of the Stage allometric model.stage.fx
Function to creates a stand for a given imputed-tree-list of a sample plot.standtab
Stand table for a _Nothofagus dombeyi_ (coihue) foreststandtabCoihue
Tabla de rodal para bosque de _Nothofagus dombeyi_ (coihue)standtabCoihue2
Stand tables for _Nothofagus alpina_ (raulí) forestsstandtabRauli
Tablas de rodal para bosques de _Nothofagus alpina_ (raulí)standtabRauli2
Stand table for _Nothofagus obliqua_ (roble) secondary forestsstandtabRoble
Tabla de rodal media para renovales de _Nothofagus obliqua_ (roble)standtabRoble2
Function to compute stand-level variables for a given imputed-tree-list.standvar
A function having the mathematical expression of the Strand model.strand.fx
A function having the mathematical expression of the Strand model.strandg.fx
Datos de ahusamiento de Eucalyptus regnanstapereuca2
Carrasco polynomial functiontaperpoly.fx
Stand variables by thinning treatment for secondary forests of _Drymis winteri_ near Valdivia, Chile.thinningtrial
Variables de estado segun tratamiento de raleo en renovales de _Drymis winteri_ en Valdivia, Chile.thinningtrial2
Diameter and height growth of Grand-fir sample trees.treegrowth
Crecimiento en diámetro y altura de árboles muestra de Grand-fir.treegrowth2
Tree-list data from a forest sampling worktreelistinve
Lista de árboles en un muestreo forestaltreelistinve2
Function to compute descriptive statistics at tree-level, segregated by a factor ('factvar') per sample plot.treestat
Tree-level volume by species in the Rucamanque foresttreevolruca
Volumen a nivel de árbol para especies nativas del bosque de Rucamanquetreevolruca2
Tree-level information of forest plots across the Hawaiian archipelago.trlhawaii
Long term tree-list data from permanent sample plotstrlpsptime
Tree-level remeasurements for a sample plot in a _Pinus radiata_ plantationtrlremeasu
Smoothed tree list data from permanent sample plotstrlsmoopsp
Function to compute the _U_-estimator for a sorted random variable, measured in a given sample plot.uestimator
Compute volume of objectsvolume
A function having the mathematical expression of the Weibull allometric model.weib.fx
A function having the mathematical expression of the Wykoff model.wykoff.fx